KAGIANA: An Excel-Based Tool for Retrieving Summary Information on Arabidopsis Genes

Various public databases provide Arabidopsis gene informationvia the internet. It is useful to abstract information obtainedfrom such databases. We have developed the KAGIANA tool, whichallows a user to retrieve summary information obtained fromselective databases and to access pages for a gene of interestin those databases. The tool is based on Microsoft Excel andprovides several macro programs for gene expression analyses.It can assist plant biologists in accessing omics informationfor plant biology. The KAGIANA tool is freely available at http://pmnedo.kazusa.or.jp/kagiana/.     

Spatial distributions of the leafminer Ophiomyia maura (Diptera: Agromyzidae) in host plant Aster ageratoides

The seasonal occurrence and among-plant and within-plant spatial distribution of the multivoltine leafminer Ophiomyia maura Meigen (Diptera: Agromyzidae) on the herbaceous plant Aster ageratoides Turcz. subsp. ovatus (Asteraceae) were investigated in the field. O. maura has at least four generations a year and mines per leaf fluctuate with a mean of 0.007 throughout the occurrence period. Seasonal occurrence is associated with abundance of new host leaves, suggesting O. maura females prefer to oviposit in newly emerged leaves. The among-plant distribution of O. maura is described by a Poisson distribution early in the season but tends to be weakly clumped later. The within-plant vertical distribution of larval mines increased from middle to upper leaves during plant development, because mined leaves in the middle position early in the season move downward with the emergence of new leaves, shifting mined leaves from the position where O. maura oviposits eggs. Later in the season, mined leaves remain where they are deposited because few new leaves emerge. The spatial distribution of O. maura , resource utilization patterns, and host plant characteristics are discussed.     

Molecular cloning and functional expression of rat liver cytosolic acetyl-CoA hydrolase.

A cytosolic acetyl-CoA hydrolase (CACH) was purified from rat liver to homogeneity by a new method using Triton X-100 as a stabilizer. We digested the purified enzyme with an endopeptidase and determined the N-terminal amino-acid sequences of the two proteolytic fragments. From the sequence data, we designed probes for RT-PCR, and amplified CACH cDNA from rat liver mRNA. The CACH cDNA contains a 1668-bp ORF encoding a protein of 556 amino-acid residues (62 017 Da). Recombinant expression of the cDNA in insect cells resulted in overproduction of functional acetyl-CoA hydrolase with comparable acyl-CoA chain-length specificity and Michaelis constant for acetyl-CoA to those of the native CACH. Database searching shows no homology to other known proteins, but reveals high similarities to two mouse expressed sequence tags (91% and 93% homology) and human mRNA for KIAA0707 hypothetical protein (50% homology) of unknown function.     

New Bromoperoxidase from Coralline Algae that Brominates Phenol Compounds

Bromoperoxidases were found in coralline algae (Corallinaceae, Rhodophyta) collected from seasides in Japan, and high enzyme activities were observed in Corallina officinalis, Corallina pilulifera and Amphiroa zonata. The optimum pHs of the enzymes from coralline algae were around 6.0. The enzymes were specific for I^? and Br^?, and did not act on Cl^? and F^?. The enzymes purified from Corallina pilulifera and Amphiroa ephedraea catalyzed the brominations of phenol and O-hydroxybenzyl alcohol in the presence of Br^? and H₂0₂ to form the same product, 2,4,6-tribromophenol.     

Selective Inhibition by Pantoyl Lactone and Butyl Alcohol of the Initiation of DNA Replication in E. coli

We studied action mechanisms of pantoyl lactone and butyl alcohol on the macromolecular synthesis of E. coli. Protein synthesis was not significantly suppressed by these agents. DNA synthesis was more remarkably affected than RNA synthesis by them. Synchronous cultures of E. coli were subsequently used to investigate the inhibition of DNA replication with these agents. It was consequently shown that these agents inhibit the initiation of a new cycle of DNA replication in this organism but permit the completion of DNA replication initiated before addition of these agents to the medium.     

Distribution of Zinc in Euglena gracilis Wild and Mutant Cells Cultured in Zinc Enriched Medium as Proved by X-Ray Microanalysis

As a part of the study of bubble expansion in wheat flour dough under temperature rise, the critical radius for expansion, and the time course of expansion of an isolated bubble were investigated. As the required physical properties for the calculation of the critical bubble radius for expansion and the time course of bubble expansion, the authors measured the surface tension of the liquid phase of wheat flour batter as a function of concentration and temperature, and the apparent diffusion coefficients of air in wheat flour dough as a function of temperature. The critical radius for expansion and the time course of expansion of the isolated bubble under temperature rise were compared with the theoretical values calculated from the diffusion theory. At constant temperature, the time course of bubble shrinkage in wheat flour dough was described well by diffusion theory with the surface tension and the apparent diffusion coefficient, indicating that the bubble shrinkage would be rate-limited by the diffusion in the liquid phase of wheat flour dough of air out of the bubble. Under temperature rise from 3°C to 43°C, every bubble larger than the critical radius expanded. This result is physically admissible. On the other hand, the calculated time course of the bubble radius under temperature rise was not in agreement with the experimental data.     

Distribution and Properties of Chromatin-Associated Nucleoside Triphosphate Diphosphatase Purified by a New Method

Chromatin-associated nucleoside triphosphate diphosphatase (NTDPase)activity was detected in Alaska pea plant only at the germinationstage in a study of the plant's development over 5 month fromthe dormant to fruiting stages. This enzyme activity was alsodetected in seedlings of several dicotyledonous plants includingsoybean, Usui pea, cowpea and cucumber, but almost none wasfound in monocotyledonous corn and rice plants. When the chromatin of pea epicotyl was fractionated into template-activeand -inactive forms by DNase II digestion, most of the NTDPaseactivity was found in the active chromatin. A new method to rapidly isolate and purify NTDPase from peaepicotyl chromatin was developed in which NTDPase was elutedwith a linear gradient of NaCl on a column packed with cellulosepowder and chromatin. DNA remained on the column and the elutedNTDPase was purified further by chromatography using trimethylamino-2-hydroxypropylcellulose (TMAP-cellulose) and a Sephadex G-100 column, whichgive chromatin 18-fold purer than the starting sample. This purified NTDPase was adsorbed by DNA-cellulose, which isfurther evidence that NTDPase is a kind of non-histone proteinassociated with DNA. Several cations including Ca^2$, Mg^2$, Mn^2$and Zn^2$ stimulated the enzyme activity, with the maximal eightfoldactivation by Ca^2$. NTDPase activity was clearly inhibited byKCN and pyrophosphate, but not by SH-blocking inhibitors andvarious metal chelators at 1 mM.